STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2194KEGG: bid:Bind_3833 hypothetical protein. (175 aa)    
Predicted Functional Partners:
Rvan_2298
PFAM: Stress-induced protein, KGG, repeat; KEGG: bid:Bind_3101 hypothetical protein.
  
  
 0.650
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
  
 0.590
Rvan_0633
DNA ligase D; KEGG: mes:Meso_1150 ATP dependent DNA ligase; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA primase small subunit.
 
    0.559
Rvan_1986
PFAM: protein of unknown function DUF892; KEGG: rpb:RPB_1737 hypothetical protein.
 
    0.546
Rvan_2193
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpc:RPC_1679 LysR family transcriptional regulator.
       0.527
Rvan_1133
TIGRFAM: glycogen debranching enzyme GlgX; 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: glycogen debranching enzyme GlgX; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.519
Rvan_2102
KEGG: mrd:Mrad2831_5652 hypothetical protein.
  
     0.490
Rvan_1706
PFAM: MgtC/SapB transporter; KEGG: rpc:RPC_2114 MgtC/SapB transporter.
   
    0.456
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
    0.439
Rvan_2195
PFAM: phosphoglucose isomerase (PGI); KEGG: pla:Plav_0292 glucose-6-phosphate isomerase.
       0.435
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.