STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2197PFAM: periplasmic solute binding protein; KEGG: ara:Arad_2765 zinc uptake ABC transporter. (328 aa)    
Predicted Functional Partners:
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 
 0.993
Rvan_3057
PFAM: ABC-3 protein; KEGG: tgr:Tgr7_2749 ABC-3 protein.
 
 
 0.986
Rvan_0243
PFAM: electron transport protein SCO1/SenC; KEGG: bja:blr1131 putative cytochrome c oxidase assembly factor transmembrane protein.
 
      0.892
Rvan_3055
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rpc:RPC_0489 ferric uptake regulator family protein; Belongs to the Fur family.
 
  
 0.661
Rvan_2178
PFAM: Peptidase M23; KEGG: bbt:BBta_1196 putative metalloendopeptidase.
 
  
 0.539
Rvan_2198
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xau:Xaut_2573 LysR family transcriptional regulator.
       0.523
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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