STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2198Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xau:Xaut_2573 LysR family transcriptional regulator. (311 aa)    
Predicted Functional Partners:
Rvan_3242
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bmi:BMEA_B0178 hypothetical protein.
  
     0.692
Rvan_0794
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rpd:RPD_4197 LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.652
Rvan_3187
KEGG: bmr:BMI_II175 transcriptional regulator, LysR family; manually curated; PFAM: regulatory protein LysR; LysR substrate-binding.
  
     0.639
Rvan_1644
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
  
  
 0.571
Rvan_2197
PFAM: periplasmic solute binding protein; KEGG: ara:Arad_2765 zinc uptake ABC transporter.
       0.523
Rvan_2199
PFAM: CsbD family protein; KEGG: azl:AZL_012380 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
       0.499
Rvan_1053
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rlg:Rleg_0654 transcriptional regulator, LysR family.
  
     0.462
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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