STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2199PFAM: CsbD family protein; KEGG: azl:AZL_012380 hypothetical protein; Belongs to the UPF0337 (CsbD) family. (57 aa)    
Predicted Functional Partners:
Rvan_0720
PFAM: protein of unknown function DUF1328; KEGG: pat:Patl_4137 hypothetical protein.
  
    0.816
Rvan_2200
PFAM: isochorismatase hydrolase; KEGG: oca:OCAR_6243 isochorismatase hydrolase.
  
    0.580
Rvan_2246
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: azl:AZL_024080 pyridoxamine 5'-phosphate oxidase-related FMN-binding.
 
    0.578
Rvan_1144
PFAM: Transglycosylase-associated protein; KEGG: rpe:RPE_3012 transglycosylase-associated protein.
  
  
 0.516
Rvan_2472
KEGG: azc:AZC_0042 putative ABC-2 transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.503
Rvan_2198
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xau:Xaut_2573 LysR family transcriptional regulator.
       0.499
Rvan_2470
PFAM: ABC-2 type transporter; KEGG: azc:AZC_0040 putative capsule polysaccharide export inner-membrane protein.
  
    0.494
Rvan_1556
PFAM: Stress-induced protein, KGG, repeat; KEGG: gox:GOX2079 hypothetical protein.
   
  
 0.484
Rvan_2298
PFAM: Stress-induced protein, KGG, repeat; KEGG: bid:Bind_3101 hypothetical protein.
   
  
 0.484
Rvan_3036
PFAM: OmpA/MotB domain protein; KEGG: mno:Mnod_1486 OmpA/MotB domain protein.
  
    0.484
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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