STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2242PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rce:RC1_2026 deoxyribodipyrimidine photolyase family protein. (484 aa)    
Predicted Functional Partners:
Rvan_3538
KEGG: mpo:Mpop_4997 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
 
  
   0.623
Rvan_1005
PFAM: TspO/MBR family protein; KEGG: mpt:Mpe_A2778 tryptophan-rich sensory protein.
 
  
 0.604
Rvan_1167
PFAM: TspO/MBR family protein; KEGG: msl:Msil_2817 TspO and MBR like protein.
 
  
 0.603
Rvan_0166
KEGG: scl:sce2182 naringenin-chalcone synthase; PFAM: chalcone and stilbene synthase domain protein.
    
   0.599
Rvan_0884
Rhodanese domain protein; KEGG: mag:amb2171 rhodanese-related sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
    
   0.599
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.599
Rvan_2241
Hypothetical protein.
       0.551
Rvan_0015
Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; methylguanine DNA methyltransferase ribonuclease domain protein; KEGG: mpo:Mpop_4835 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain.
     
 0.547
Rvan_0155
KEGG: msl:Msil_2029 phytoene desaturase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase.
 
  
 0.530
Rvan_2243
PFAM: N-formylglutamate amidohydrolase; KEGG: oan:Oant_4283 N-formylglutamate amidohydrolase.
       0.522
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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