STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2247PFAM: iron permease FTR1; KEGG: bid:Bind_0107 iron permease FTR1. (289 aa)    
Predicted Functional Partners:
Rvan_2400
PFAM: Ferrous iron transport protein; KEGG: bmr:BMI_II378 membrane antigen, putative.
 
  
 0.963
Rvan_2401
PFAM: Ferrous iron transport protein; KEGG: rpc:RPC_3505 membrane antigen.
 
  
 0.934
Rvan_2398
KEGG: bid:Bind_0392 hypothetical protein.
 
    0.879
Rvan_1399
PFAM: extracellular solute-binding protein family 1; KEGG: extracellular solute-binding protein family 1.
   
  
 0.825
Rvan_2399
KEGG: rpc:RPC_3504 hypothetical protein.
 
   
 0.800
Rvan_0492
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
   
  
 0.534
Rvan_0496
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
   
  
 0.534
Rvan_1225
PFAM: periplasmic binding protein; KEGG: pde:Pden_3010 periplasmic binding protein.
   
  
 0.534
Rvan_2499
PFAM: periplasmic binding protein; KEGG: rpc:RPC_4256 periplasmic binding protein.
   
  
 0.534
Rvan_0498
KEGG: oca:OCAR_4561 putative iron compound ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
   
  
 0.532
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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