STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2257PFAM: GCN5-related N-acetyltransferase; KEGG: rpd:RPD_0697 GCN5-related N-acetyltransferase. (176 aa)    
Predicted Functional Partners:
Rvan_2256
KEGG: ccs:CCNA_03791 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
       0.608
Rvan_0917
PFAM: protein of unknown function DUF1150; KEGG: oca:OCAR_4463 hypothetical protein.
  
     0.605
Rvan_1079
Protein of unknown function DUF1778; KEGG: nwi:Nwi_0837 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1778.
   
   0.604
Rvan_1938
Hypothetical protein; Manually curated; KEGG: oca:OCAR_4675 hypothetical protein.
  
     0.576
Rvan_1143
Hypothetical protein; KEGG: xau:Xaut_2468 porin.
  
     0.561
Rvan_1730
Porin; KEGG: rpt:Rpal_3853 porin.
  
     0.549
Rvan_3245
Porin; KEGG: rpt:Rpal_0925 porin.
  
     0.536
Rvan_1801
KEGG: rpb:RPB_2145 outer membrane protein.
  
     0.520
Rvan_2614
PFAM: Domain of unknown function DUF1849; KEGG: bid:Bind_1791 hypothetical protein.
  
     0.509
Rvan_0892
PFAM: Phasin; KEGG: mpo:Mpop_2492 phasin.
  
     0.506
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.