STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2264PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pnu:Pnuc_1611 methylmalonyl-CoA decarboxylase; Belongs to the enoyl-CoA hydratase/isomerase family. (305 aa)    
Predicted Functional Partners:
Rvan_3409
PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: azo:azo0394 acyl-CoA dehydrogenase.
 
  0.953
Rvan_2585
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: xau:Xaut_4726 carbamoyl-phosphate synthase L chain ATP-binding.
  
 0.926
Rvan_1831
TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: rpt:Rpal_2647 methylcitrate synthase; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
 0.925
Rvan_1148
PFAM: carboxyl transferase; KEGG: carboxyl transferase.
  
 0.922
Rvan_0121
PFAM: AMP-dependent synthetase and ligase; KEGG: bbt:BBta_0943 putative propionate--CoA ligase.
  
 0.921
acsA
acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.921
Rvan_3597
acetate/CoA ligase; KEGG: rsq:Rsph17025_0782 acetate--CoA ligase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase.
  
 0.921
Rvan_3650
TIGRFAM: methylmalonyl-CoA epimerase; KEGG: xau:Xaut_4617 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
 0.913
Rvan_3411
KEGG: rsp:RSP_2962 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase.
   
 0.910
Rvan_1921
KEGG: pla:Plav_0752 quinone oxidoreductase putative YhdH/YhfP; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
  
  0.908
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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