STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2273KEGG: mno:Mnod_1086 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein. (336 aa)    
Predicted Functional Partners:
Rvan_2165
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: azc:AZC_1772 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
  
 0.997
Rvan_1142
TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: azc:AZC_0992 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
  
 0.995
Rvan_2164
KEGG: bra:BRADO2682 methylmalonyl-CoA mutase small subunit (MCM-beta); PFAM: methylmalonyl-CoA mutase.
 
  
 0.845
Rvan_3650
TIGRFAM: methylmalonyl-CoA epimerase; KEGG: xau:Xaut_4617 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 0.825
Rvan_2274
PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: bja:bll3047 pyrrolidone-carboxylate peptidase; Belongs to the peptidase C15 family.
       0.788
Rvan_2275
Hypothetical protein; KEGG: rpd:RPD_1920 twin-arginine translocation pathway signal.
       0.788
Rvan_2276
PFAM: Malate/L-lactate dehydrogenase; KEGG: mno:Mnod_3707 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.773
Rvan_2272
KEGG: ttj:TTHA1223 hypothetical protein.
       0.532
Rvan_1148
PFAM: carboxyl transferase; KEGG: carboxyl transferase.
 
     0.411
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.