Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2274PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: bja:bll3047 pyrrolidone-carboxylate peptidase; Belongs to the peptidase C15 family. (242 aa)    
Predicted Functional Partners:
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
 
 
   0.840
Rvan_2275
Hypothetical protein; KEGG: rpd:RPD_1920 twin-arginine translocation pathway signal.
       0.822
Rvan_1975
PFAM: histone deacetylase superfamily; KEGG: histone deacetylase.
    
   0.813
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.796
Rvan_2273
KEGG: mno:Mnod_1086 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein.
       0.790
Rvan_1260
KEGG: ret:RHE_PE00131 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap.
    
 
 0.781
Rvan_2276
PFAM: Malate/L-lactate dehydrogenase; KEGG: mno:Mnod_3707 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.773
Rvan_2855
Hypothetical protein; KEGG: ana:all0192 serine/threonine kinase.
   
   0.770
Rvan_0008
TIGRFAM: CbbX protein; PFAM: AAA ATPase central domain protein; KEGG: rsp:RSP_1280 CbbX protein; SMART: AAA ATPase.
    
   0.756
Rvan_0635
AAA ATPase central domain protein; KEGG: scl:sce5713 cell division cycle protein 48-related protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; Belongs to the AAA ATPase family.
    
   0.756
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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