STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2276PFAM: Malate/L-lactate dehydrogenase; KEGG: mno:Mnod_3707 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (329 aa)    
Predicted Functional Partners:
Rvan_3576
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: mno:Mnod_3706 D-galactarate dehydratase/altronate hydrolase domain protein.
 
  
 0.975
Rvan_3577
PFAM: SAF domain protein; KEGG: mrd:Mrad2831_5980 hypothetical protein.
 
  
 0.975
Rvan_3575
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: mrd:Mrad2831_4214 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
 
  
 0.941
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
    
 0.924
Rvan_1278
PFAM: aminotransferase class I and II; KEGG: pla:Plav_2300 aspartate aminotransferase.
     
 0.908
Rvan_2273
KEGG: mno:Mnod_1086 LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein.
       0.773
Rvan_2274
PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: bja:bll3047 pyrrolidone-carboxylate peptidase; Belongs to the peptidase C15 family.
       0.773
Rvan_2275
Hypothetical protein; KEGG: rpd:RPD_1920 twin-arginine translocation pathway signal.
       0.773
Rvan_2272
KEGG: ttj:TTHA1223 hypothetical protein.
       0.532
Rvan_3244
KEGG: mag:amb0423 hypothetical protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component.
 
  
 0.470
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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