STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2278TIGRFAM: nucleotide sugar dehydrogenase; KEGG: mmr:Mmar10_2489 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase. (457 aa)    
Predicted Functional Partners:
Rvan_3668
PFAM: NAD-dependent epimerase/dehydratase; KEGG: hya:HY04AAS1_1611 NAD-dependent epimerase/dehydratase.
 0.995
Rvan_1313
TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; KEGG: bid:Bind_0435 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase.
 
 0.979
Rvan_3089
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.979
Rvan_0185
PFAM: NAD-dependent epimerase/dehydratase; KEGG: tmz:Tmz1t_3455 NAD-dependent epimerase/dehydratase.
 0.969
Rvan_0401
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mlo:mlr7549 nucleotide sugar epimerase.
 0.966
Rvan_2951
Manually curated; TIGRFAM: UDP-glucose 4-epimerase; KEGG: mei:Msip34_1820 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.949
Rvan_0027
PFAM: NAD-dependent epimerase/dehydratase; KEGG: aca:ACP_0749 NAD dependent epimerase/dehydratase family protein.
 0.913
Rvan_3091
KEGG: swi:Swit_4019 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.901
Rvan_0418
PFAM: polysaccharide biosynthesis protein; KEGG: tel:tlr1345 hypothetical protein.
  
  
 0.855
Rvan_3110
Hypothetical protein; KEGG: abu:Abu_0682 O-antigen translocase.
  
  
 0.855
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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