STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2291PFAM: Protein of unknown function DUF2007; KEGG: mno:Mnod_4374 hypothetical protein. (83 aa)    
Predicted Functional Partners:
Rvan_2290
PFAM: Methyltransferase type 11; KEGG: pla:Plav_0724 O-methyltransferase.
       0.773
Rvan_3377
KEGG: rpd:RPD_0940 hypothetical protein.
 
     0.737
Rvan_3685
TIGRFAM: conserved hypothetical protein; KEGG: hypothetical protein.
  
     0.717
Rvan_3684
PFAM: protein of unknown function DUF1355; KEGG: pla:Plav_2231 hypothetical protein.
  
     0.681
Rvan_2289
PFAM: peptidase S49; KEGG: peptidase S49.
 
     0.658
Rvan_2361
PFAM: Uncharacterised conserved protein UCP032025; KEGG: pde:Pden_1779 hypothetical protein.
  
     0.629
Rvan_0816
PFAM: protein of unknown function DUF339; KEGG: azc:AZC_1220 hypothetical protein.
 
     0.587
Rvan_2292
PFAM: Polyprenyl synthetase; KEGG: bid:Bind_0855 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.587
Rvan_1192
PFAM: Heparinase II/III family protein; KEGG: heparinase II/III family protein.
  
     0.563
Rvan_3686
Protein of unknown function DUF58; KEGG: sme:SMc02704 hypothetical protein; manually curated; PFAM: protein of unknown function DUF58.
  
     0.547
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.