STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2321PFAM: protein of unknown function DUF330; KEGG: mrd:Mrad2831_1955 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Rvan_2320
PFAM: Mammalian cell entry related domain protein; KEGG: xau:Xaut_4115 hypothetical protein.
 
   0.914
Rvan_2319
KEGG: pla:Plav_2513 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.901
Rvan_2318
PFAM: protein of unknown function DUF140; KEGG: mrd:Mrad2831_1952 hypothetical protein.
 
  
 0.882
Rvan_1938
Hypothetical protein; Manually curated; KEGG: oca:OCAR_4675 hypothetical protein.
  
     0.569
Rvan_1363
PFAM: MltA-interacting MipA family protein; KEGG: rpc:RPC_0793 MltA-interacting MipA.
  
     0.540
Rvan_1287
PFAM: OstA family protein; KEGG: rpt:Rpal_0049 OstA family protein.
  
     0.489
Rvan_0926
Hypothetical protein; KEGG: mno:Mnod_3620 flagellar export protein FliJ.
  
     0.447
Rvan_2526
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.435
Rvan_2533
KEGG: msl:Msil_0025 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.435
Rvan_1935
KEGG: bqu:BQ07600 hypothetical protein.
  
     0.427
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.