STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2344PFAM: Methyltransferase type 11; KEGG: art:Arth_1026 methyltransferase type 11. (280 aa)    
Predicted Functional Partners:
Rvan_2343
KEGG: bac:BamMC406_2936 flagellar basal body P-ring biosynthesis protein FlgA.
       0.523
Rvan_3506
TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: mpo:Mpop_1702 ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; Lipid A 3-O-deacylase-related; Belongs to the Cob(I)alamin adenosyltransferase family.
   
    0.410
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.