Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2356KEGG: pla:Plav_0930 17 kDa surface antigen. (149 aa)    
Predicted Functional Partners:
Rvan_1306
KEGG: pla:Plav_3330 hypothetical protein.
  
     0.635
Rvan_2355
Integral membrane sensor signal transduction histidine kinase; KEGG: bbt:BBta_3068 putative two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein.
     
 0.594
Rvan_2354
Two component transcriptional regulator, winged helix family; KEGG: xau:Xaut_3176 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
       0.538
Rvan_2353
Hypothetical protein; KEGG: dwi:Dwil_GK17486 GK17486 gene product from transcript GK17486-RA.
       0.503
Rvan_2865
PFAM: Protein of unknown function DUF2159, secreted; KEGG: msl:Msil_0337 hypothetical protein.
  
     0.483
Rvan_3216
TIGRFAM: cytochrome c-type biogenesis protein CcmI; KEGG: rpc:RPC_1834 tetratricopeptide TPR_2.
 
     0.483
Rvan_1859
PFAM: AsmA family protein; KEGG: azc:AZC_4482 hypothetical protein.
  
     0.444
Rvan_1687
PFAM: Sporulation domain-containing protein; KEGG: azc:AZC_2805 hypothetical protein.
  
     0.408
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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