STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2418PFAM: protein of unknown function DUF1491; KEGG: oca:OCAR_6628 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Rvan_3685
TIGRFAM: conserved hypothetical protein; KEGG: hypothetical protein.
  
     0.734
Rvan_3684
PFAM: protein of unknown function DUF1355; KEGG: pla:Plav_2231 hypothetical protein.
  
     0.728
Rvan_3377
KEGG: rpd:RPD_0940 hypothetical protein.
  
     0.654
Rvan_2361
PFAM: Uncharacterised conserved protein UCP032025; KEGG: pde:Pden_1779 hypothetical protein.
  
     0.653
Rvan_0075
KEGG: pla:Plav_3269 hypothetical protein.
  
     0.637
Rvan_2392
Manually curated; PFAM: ATP-binding region ATPase domain protein; KEGG: pla:Plav_0305 integral membrane sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein.
 
     0.629
Rvan_2339
PFAM: Methyltransferase type 11; KEGG: pla:Plav_1579 methyltransferase type 11.
  
     0.593
Rvan_2857
Helix-turn-helix domain protein; KEGG: rhi:NGR_c00470 putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.591
Rvan_0547
PFAM: Uncharacterised conserved protein UCP032146; KEGG: rhi:NGR_c02250 hypothetical protein; Belongs to the UPF0262 family.
  
     0.529
Rvan_1350
KEGG: azc:AZC_0926 hypothetical protein.
  
     0.529
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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