STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2467Radical SAM domain protein; KEGG: gdi:GDI_2405 hypothetical protein; PFAM: Radical SAM domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat. (434 aa)    
Predicted Functional Partners:
Rvan_2465
PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4936 glycosyl transferase, group 1.
 
   
 0.850
Rvan_2466
KEGG: ara:Arad_9129 hypothetical protein.
       0.773
Rvan_3259
PFAM: Peptidase M23; KEGG: nha:Nham_0524 peptidase M23B.
 
 
 
 0.753
Rvan_2578
KEGG: mno:Mnod_2431 peptidase C14 caspase catalytic subunit P20; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
 
 
 
 0.715
Rvan_1163
Putative adenylate/guanylate cyclase; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: rhi:NGR_b01410 probable adenylate class-3/4/guanylyl cyclase; SMART: Tetratricopeptide repeat.
 
 
 0.707
Rvan_0195
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: mar:MAE_03780 TPR repeat-containing protein.
 
 
 
 0.677
Rvan_3252
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: tet:TTHERM_00420670 TPR Domain containing protein.
 
 
 
 0.670
Rvan_2470
PFAM: ABC-2 type transporter; KEGG: azc:AZC_0040 putative capsule polysaccharide export inner-membrane protein.
 
   
 0.655
Rvan_1262
PFAM: peptidase C14 caspase catalytic subunit p20; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: mno:Mnod_2951 peptidase C14 caspase catalytic subunit P20.
 
 
 
 0.638
Rvan_2468
KEGG: mac:MA1420 cell surface protein.
       0.625
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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