Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rvan_2472KEGG: azc:AZC_0042 putative ABC-2 transporter; PFAM: ABC transporter related; SMART: AAA ATPase. (227 aa)    
Predicted Functional Partners:
Rvan_2470
PFAM: ABC-2 type transporter; KEGG: azc:AZC_0040 putative capsule polysaccharide export inner-membrane protein.
 0.999
Rvan_2471
PFAM: lipopolysaccharide biosynthesis protein; KEGG: ara:Arad_9137 capsule polysaccharide export transport system permease protein.
 
 
 0.997
Rvan_2469
KEGG: azc:AZC_0039 WcbD protein.
 
 
 0.995
Rvan_2473
PFAM: glycosyl transferase group 1; KEGG: mno:Mnod_5364 glycosyl transferase group 1.
 
 
 0.945
Rvan_2464
PFAM: polysaccharide export protein; KEGG: mch:Mchl_2758 polysaccharide export protein.
 
  
 0.934
Rvan_2463
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: swi:Swit_2454 capsule polysaccharide biosynthesis protein.
 
   
 0.851
Rvan_2462
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.771
Rvan_2465
PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4936 glycosyl transferase, group 1.
 
 
 0.756
Rvan_2201
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: azl:AZL_f01870 mannose-1-phosphate guanylyltransferase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.736
Rvan_2740
PFAM: phosphoribosyltransferase; KEGG: azc:AZC_4295 competence protein F.
   
    0.718
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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