Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vapC-4PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (132 aa)    
Predicted Functional Partners:
Rvan_2481
KEGG: sme:SMc00686 hypothetical protein.
 
 
 0.993
Rvan_3224
PFAM: Protein of unknown function DUF2191; KEGG: protein of unknown function DUF2191.
 
   0.802
Rvan_2482
PFAM: Relaxase/mobilization nuclease family protein; KEGG: net:Neut_2579 relaxase/mobilization nuclease family protein.
       0.561
Rvan_2483
Hypothetical protein; KEGG: asa:ASA_3473 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
       0.561
Rvan_1488
Putative transcription regulator with HTH domain; KEGG: pde:Pden_0265 XRE family transcriptional regulator.
  
     0.489
Rvan_1080
PFAM: GCN5-related N-acetyltransferase; KEGG: rpt:Rpal_1884 GCN5-related N-acetyltransferase.
  
     0.462
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.445
Rvan_2484
PFAM: protein of unknown function DUF927; KEGG: lpf:lpl1073 hypothetical protein.
 
     0.414
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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