Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Knowledge-based Evidence
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Rvan_2496KEGG: vap:Vapar_6049 shikimate/quinate 5-dehydrogenase. (320 aa)    
Predicted Functional Partners:
Rvan_2495
precorrin-6A synthase (deacetylating); Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.
       0.762
Rvan_0373
PFAM: cell wall hydrolase SleB; KEGG: msl:Msil_1116 cell wall hydrolase SleB.
  
  
 0.594
Rvan_0282
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
  
     0.489
Rvan_3089
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
   
    0.479
Rvan_0345
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bra:BRADO4549 putative D-alanyl-D-alanine carboxypeptidase (peptidase S11)(dd-carboxypeptidase); PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain-containing protein; Belongs to the peptidase S11 family.
  
     0.453
Rvan_0874
PFAM: protein of unknown function DUF421; KEGG: mea:Mex_2p1137 hypothetical protein.
  
   
 0.446
Rvan_2494
PFAM: TROVE domain-containing protein; KEGG: mrd:Mrad2831_1806 TROVE domain-containing protein.
       0.442
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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