Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2499PFAM: periplasmic binding protein; KEGG: rpc:RPC_4256 periplasmic binding protein. (286 aa)    
Predicted Functional Partners:
Rvan_2500
KEGG: rpc:RPC_4255 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.976
Rvan_2501
KEGG: nha:Nham_3730 transport system permease protein; manually curated; PFAM: transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.970
Rvan_0611
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mes:Meso_2063 TonB-dependent receptor.
 
   
 0.832
Rvan_0498
KEGG: oca:OCAR_4561 putative iron compound ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.743
Rvan_2390
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.734
Rvan_1223
PFAM: transport system permease protein; KEGG: pde:Pden_3012 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.709
Rvan_1027
PFAM: transport system permease protein; KEGG: pla:Plav_0181 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.690
Rvan_0497
PFAM: transport system permease protein; KEGG: nwi:Nwi_2075 ABC-type Fe3+-siderophore transport system permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.687
Rvan_1224
PFAM: transport system permease protein; KEGG: pde:Pden_3011 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.675
Rvan_1222
KEGG: pde:Pden_3013 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.655
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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