STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2500KEGG: rpc:RPC_4255 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (259 aa)    
Predicted Functional Partners:
Rvan_2501
KEGG: nha:Nham_3730 transport system permease protein; manually curated; PFAM: transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.984
Rvan_2499
PFAM: periplasmic binding protein; KEGG: rpc:RPC_4256 periplasmic binding protein.
 
 
 0.975
Rvan_1027
PFAM: transport system permease protein; KEGG: pla:Plav_0181 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.939
Rvan_0497
PFAM: transport system permease protein; KEGG: nwi:Nwi_2075 ABC-type Fe3+-siderophore transport system permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.934
Rvan_1223
PFAM: transport system permease protein; KEGG: pde:Pden_3012 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.913
Rvan_1224
PFAM: transport system permease protein; KEGG: pde:Pden_3011 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.909
Rvan_0116
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
  
 0.751
Rvan_1025
PFAM: Haemin-degrading family protein; KEGG: rce:RC1_3858 hemin transport protein.
   
 0.736
Rvan_1026
PFAM: periplasmic binding protein; KEGG: rce:RC1_3859 hemin-binding periplasmic protein HmuT precursor, putative.
 
 
 0.734
Rvan_0492
PFAM: periplasmic binding protein; KEGG: avn:Avin_00450 ABC transporter, periplasmic binding protein.
 
 
 0.690
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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