STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2570KEGG: mdi:METDI0609 hypothetical protein. (216 aa)    
Predicted Functional Partners:
Rvan_2566
PFAM: Lytic transglycosylase catalytic; KEGG: met:M446_3220 lytic transglycosylase catalytic.
       0.800
Rvan_2567
PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: spw:SPCG_1750 cell wall surface anchor family protein.
       0.800
Rvan_2568
KEGG: mpo:Mpop_0611 chemotaxis protein.
       0.800
Rvan_2569
KEGG: mrd:Mrad2831_1679 OmpA/MotB domain-containing protein; manually curated; PFAM: OmpA/MotB domain protein.
       0.800
Rvan_2571
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
       0.800
Rvan_2572
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
       0.626
Rvan_2565
KEGG: bra:BRADO6065 putative response regulator receiver (CheY-like protein); PFAM: response regulator receiver; SMART: response regulator receiver.
       0.536
Rvan_2563
TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: mdi:METDI0663 flagellum-specific ATP synthase; SMART: AAA ATPase.
       0.408
Rvan_2564
KEGG: bja:blr6884 flagellar basal body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; flagellar hook-basal body protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; Belongs to the flagella basal body rod proteins family.
       0.408
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.