Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2574KEGG: rpd:RPD_1244 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Rvan_2576
KEGG: rpd:RPD_3677 CheW-like protein; PFAM: CheW domain protein; SMART: CheW domain protein.
 
     0.878
Rvan_2575
KEGG: mno:Mnod_1691 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein.
 
     0.796
Rvan_2573
KEGG: rce:RC1_0897 methyl-accepting chemotaxis protein, putative; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache type 2 domain protein; SMART: chemotaxis sensory transducer.
 
     0.619
Rvan_2572
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
     0.488
Rvan_2558
PFAM: flagellar FlbT family protein; KEGG: mrd:Mrad2831_1703 flagellar biosynthesis repressor FlbT.
 
     0.482
Rvan_0767
KEGG: met:M446_6293 hypothetical protein.
  
     0.480
Rvan_2577
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: nmu:Nmul_A1718 NADH:flavin oxidoreductase/NADH oxidase.
       0.447
Rvan_2565
KEGG: bra:BRADO6065 putative response regulator receiver (CheY-like protein); PFAM: response regulator receiver; SMART: response regulator receiver.
 
     0.418
Rvan_0096
PFAM: MaoC domain protein dehydratase; KEGG: mno:Mnod_3627 MaoC domain protein dehydratase.
  
     0.400
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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