STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2578KEGG: mno:Mnod_2431 peptidase C14 caspase catalytic subunit P20; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat. (338 aa)    
Predicted Functional Partners:
Rvan_3252
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: tet:TTHERM_00420670 TPR Domain containing protein.
  
     0.767
Rvan_1483
KEGG: sfu:Sfum_3853 hypothetical protein.
  
 0.680
Rvan_1163
Putative adenylate/guanylate cyclase; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: rhi:NGR_b01410 probable adenylate class-3/4/guanylyl cyclase; SMART: Tetratricopeptide repeat.
 
 
 0.679
Rvan_2579
PFAM: Extracellular ligand-binding receptor; KEGG: bra:BRADO6575 putative ABC-type branched-chain amino acid transport system, periplasmic component.
       0.675
Rvan_2467
Radical SAM domain protein; KEGG: gdi:GDI_2405 hypothetical protein; PFAM: Radical SAM domain protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat.
 
   
 0.642
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
   
 0.629
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.628
Rvan_3466
TIGRFAM: small GTP-binding protein; PFAM: Ras family protein; KEGG: chl:Chy400_1355 small GTP-binding protein; SMART: Ras small GTPase, Rab type.
 
 0.538
Rvan_0538
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: bid:Bind_0857 TPR repeat-containing protein.
 
 
0.536
Rvan_2934
KEGG: reu:Reut_A0922 hypothetical protein; PFAM: protein of unknown function DUF323; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
 
 0.533
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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