STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2613PFAM: Flp/Fap pilin component; KEGG: bja:bsl4812 fimbriae associated protein. (60 aa)    
Predicted Functional Partners:
Rvan_2612
PFAM: peptidase A24A prepilin type IV; KEGG: rpd:RPD_3518 peptidase A24A, prepilin type IV.
  
  
 0.895
Rvan_3402
Hypothetical protein; KEGG: mlo:mll0896 septum site-determining protein.
  
  
 0.779
Rvan_3404
PFAM: type II and III secretion system protein; transport-associated; KEGG: mno:Mnod_2567 type II and III secretion system protein; Belongs to the bacterial secretin family.
  
  
 0.583
Rvan_2610
PFAM: NLP/P60 protein; KEGG: mdi:METDI0995 hypothetical protein.
       0.471
Rvan_2611
PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: bbt:BBta_7039 leucine aminopeptidase; Belongs to the peptidase M17 family.
       0.471
Rvan_2537
KEGG: mlo:mll2905 flagellar motor protein MotA.
   
  
 0.444
Rvan_2614
PFAM: Domain of unknown function DUF1849; KEGG: bid:Bind_1791 hypothetical protein.
       0.419
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.