Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rvan_2618Hypothetical protein; Manually curated; KEGG: nhl:Nhal_1844 hypothetical protein. (452 aa)    
Predicted Functional Partners:
Rvan_2617
Regulatory protein TetR; KEGG: rec:RHECIAT_CH0002699 probable transcriptional regulator protein, TetR family; manually curated; PFAM: regulatory protein TetR.
       0.678
Rvan_2619
PFAM: Hly-III family protein; KEGG: azl:AZL_002160 hypothetical protein.
       0.584
Rvan_2615
KEGG: rpc:RPC_1247 hypothetical protein.
 
     0.566
Rvan_2616
PFAM: O-methyltransferase family 3; KEGG: bte:BTH_II0913 O-methyltransferase.
       0.485
Rvan_2885
PFAM: protein of unknown function DUF214; KEGG: hna:Hneap_0780 protein of unknown function DUF214.
   
    0.483
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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