STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2622PFAM: Methyltransferase type 11; KEGG: mar:MAE_59960 putative methyltransferase. (275 aa)    
Predicted Functional Partners:
Rvan_2621
PFAM: Amidase; KEGG: bte:BTH_I3161 6-aminohexanoate-cyclic-dimer hydrolase; Belongs to the amidase family.
     
 0.542
Rvan_2623
Tryptophanase; KEGG: rsq:Rsph17025_3640 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase.
       0.501
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
  
  
 0.472
Rvan_2624
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_1358 3-ketoacyl-(acyl-carrier-protein) reductase.
   
   0.401
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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