STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2626PFAM: FxsA cytoplasmic membrane protein; KEGG: pde:Pden_2785 FxsA cytoplasmic membrane protein. (177 aa)    
Predicted Functional Partners:
hslV
20S proteasome A and B subunits; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
   
    0.706
Rvan_0644
Thioredoxin; KEGG: azc:AZC_4257 thioredoxin precursor; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein.
   
    0.704
Rvan_0340
PFAM: heat shock protein Hsp20; KEGG: mno:Mnod_1728 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
  
    0.588
Rvan_2627
PFAM: import inner membrane translocase subunit Tim44; KEGG: azc:AZC_4600 mitochondrial import inner membrane translocase.
       0.555
Rvan_2628
PFAM: MltA domain protein; 3D domain-containing protein; KEGG: bmr:BMI_I2097 transglycosylase-related protein.
       0.555
hslU
Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
   
    0.524
Rvan_2629
KEGG: met:M446_1376 Smr protein/MutS2; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2.
       0.513
htpX
PFAM: peptidase M48 Ste24p; KEGG: rpt:Rpal_0855 heat shock protein HtpX; Belongs to the peptidase M48B family.
   
  
 0.470
Rvan_1413
PFAM: peptidase M48 Ste24p; KEGG: bra:BRADO6374 putative protease (heat shock protein).
   
  
 0.470
Rvan_1665
PFAM: heat shock protein Hsp20; KEGG: bja:blr7961 HspC2 heat shock protein; Belongs to the small heat shock protein (HSP20) family.
   
    0.469
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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