STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2695Hypothetical protein; KEGG: cvi:CV_2527 transmembrane regulator PrtR. (96 aa)    
Predicted Functional Partners:
Rvan_2507
KEGG: mlo:mlr3700 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver.
  
 
 0.478
Rvan_2696
KEGG: hypothetical protein.
       0.466
Rvan_1238
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rpa:RPA3282 RNA polymerase ECF-type sigma factor, FecI; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
 
 0.414
Rvan_1271
PFAM: Sigma-70 region 4 type 2; KEGG: nar:Saro_1592 sigma-24 (FecI-like).
  
 
 0.414
Rvan_2303
KEGG: xau:Xaut_4287 hypothetical protein.
  
 
 0.414
Rvan_2509
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: jan:Jann_3565 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.414
Rvan_2715
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rce:RC1_1638 RNA polymerase sigma-70 factor, ECF family protein; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
 
 0.414
Rvan_3453
KEGG: xau:Xaut_1595 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein.
  
 
 0.414
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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