STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2702PFAM: glycoside hydrolase family 3 domain protein; KEGG: rru:Rru_A3299 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 3 family. (708 aa)    
Predicted Functional Partners:
Rvan_0108
PFAM: glycoside hydrolase family 31; KEGG: mmw:Mmwyl1_2781 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.965
Rvan_2700
KEGG: msl:Msil_0406 hypothetical protein.
    0.960
Rvan_2698
KEGG: rle:pRL110527 hypothetical protein.
 
   
 0.799
Rvan_2699
KEGG: vap:Vapar_5525 glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related.
 
    0.665
Rvan_2703
PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase-like; KEGG: pzu:PHZ_p0184 phosphoketolase.
       0.636
Rvan_2701
KEGG: rru:Rru_A3300 ABC transporter component; manually curated; PFAM: ABC transporter domain-containing protein; ABC transporter related.
       0.583
Rvan_0829
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: syf:Synpcc7942_1400 endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.
 
   
 0.559
Rvan_2148
KEGG: cak:Caul_0228 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; glycoside hydrolase family 18; glycosyl transferase family 2; SMART: chitinase II.
 
   
 0.545
Rvan_3377
KEGG: rpd:RPD_0940 hypothetical protein.
  
  
 0.527
Rvan_0670
KEGG: mch:Mchl_1972 N-acetylmuramoyl-L-alanine amidase family 2; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2.
  
  
 0.444
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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