Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2722PFAM: protein of unknown function DUF992; KEGG: oca:OCAR_7171 hypothetical protein. (151 aa)    
Predicted Functional Partners:
Rvan_3203
Porin; KEGG: xau:Xaut_2468 porin.
  
     0.738
Rvan_1143
Hypothetical protein; KEGG: xau:Xaut_2468 porin.
  
     0.715
Rvan_1195
Porin; KEGG: porin.
  
     0.681
Rvan_0276
Hypothetical protein; KEGG: azc:AZC_3726 outer membrane protein Omp31 precursor.
  
     0.669
Rvan_0615
PFAM: protein of unknown function DUF1036; KEGG: rpb:RPB_1424 hypothetical protein.
  
     0.657
Rvan_1801
KEGG: rpb:RPB_2145 outer membrane protein.
  
     0.656
Rvan_1730
Porin; KEGG: rpt:Rpal_3853 porin.
  
     0.655
Rvan_2888
KEGG: bja:bll4354 hypothetical protein.
  
     0.643
Rvan_0917
PFAM: protein of unknown function DUF1150; KEGG: oca:OCAR_4463 hypothetical protein.
  
     0.637
Rvan_0349
PFAM: branched-chain amino acid transport; KEGG: rpb:RPB_2402 hypothetical protein.
  
     0.635
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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