STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2804PFAM: Conjugal transfer protein TrbC; KEGG: bam:Bamb_6634 conjugal transfer protein TrbC. (112 aa)    
Predicted Functional Partners:
Rvan_2802
KEGG: net:Neut_2552 CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.
 
 
 
 0.956
Rvan_2800
KEGG: kpe:KPK_1289 P-type conjugative transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.950
Rvan_2805
P-type conjugative transfer ATPase TrbB; KEGG: net:Neut_2555 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E.
 
   
 0.941
Rvan_2799
KEGG: hna:Hneap_1665 conjugal transfer protein.
 
   
 0.911
Rvan_2798
KEGG: eba:p2B6 conjugal transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.
 
   
 0.904
Rvan_2797
PFAM: conjugation TrbI family protein; KEGG: net:Neut_2539 conjugation TrbI family protein.
 
   
 0.870
Rvan_1074
KEGG: net:Neut_2552 CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.
 
 
 
 0.814
Rvan_1762
KEGG: net:Neut_2552 CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.
 
 
 
 0.814
Rvan_2809
KEGG: app:CAP2UW1_4642 hypothetical protein; TIGRFAM: conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region.
 
   
 0.796
Rvan_1069
PFAM: conjugation TrbI family protein; KEGG: net:Neut_2539 conjugation TrbI family protein.
 
   
 0.795
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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