Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2805P-type conjugative transfer ATPase TrbB; KEGG: net:Neut_2555 type II secretion system protein E; TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E. (321 aa)    
Predicted Functional Partners:
Rvan_2802
KEGG: net:Neut_2552 CagE, TrbE, VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: AAA ATPase.
 
   
 0.946
Rvan_2804
PFAM: Conjugal transfer protein TrbC; KEGG: bam:Bamb_6634 conjugal transfer protein TrbC.
 
   
 0.941
Rvan_2800
KEGG: kpe:KPK_1289 P-type conjugative transfer protein TrbL; TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.935
Rvan_2799
KEGG: hna:Hneap_1665 conjugal transfer protein.
 
   
 0.895
Rvan_2798
KEGG: eba:p2B6 conjugal transfer protein TrbG; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX.
 
   
 0.887
Rvan_2797
PFAM: conjugation TrbI family protein; KEGG: net:Neut_2539 conjugation TrbI family protein.
 
   
 0.850
Rvan_3402
Hypothetical protein; KEGG: mlo:mll0896 septum site-determining protein.
 
  
 0.848
Rvan_3404
PFAM: type II and III secretion system protein; transport-associated; KEGG: mno:Mnod_2567 type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 0.820
Rvan_2803
KEGG: net:Neut_2553 conjugal transfer protein TrbD.
     
 0.789
Rvan_2801
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: kpe:KPK_1290 P-type conjugative transfer protein TrbJ.
     
 0.787
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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