STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2823PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: npu:Npun_F4892 RNA-directed DNA polymerase (reverse transcriptase). (365 aa)    
Predicted Functional Partners:
Rvan_2826
KEGG: paa:Paes_2388 hypothetical protein.
 
     0.885
Rvan_2822
PFAM: protein of unknown function DUF323; KEGG: ter:Tery_1731 hypothetical protein.
 
  
 0.655
Rvan_2824
Plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_1256 XRE family plasmid maintenance system antidote protein; SMART: helix-turn-helix domain protein.
       0.634
Rvan_2825
PFAM: plasmid maintenance system killer; KEGG: mlo:mlr1576 hypothetical protein.
       0.634
Rvan_2827
PFAM: protein of unknown function DUF323; KEGG: WD40 repeat, subgroup.
 
  
 0.521
Rvan_2830
SMART: AAA ATPase; KEGG: rru:Rru_A3262 hypothetical protein.
 
     0.410
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.