Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rvan_2829KEGG: app:CAP2UW1_2906 hypothetical protein. (389 aa)    
Predicted Functional Partners:
Rvan_2830
SMART: AAA ATPase; KEGG: rru:Rru_A3262 hypothetical protein.
 
    
0.778
Rvan_1260
KEGG: ret:RHE_PE00131 serine protease; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap.
  
 
 
 0.581
Rvan_2827
PFAM: protein of unknown function DUF323; KEGG: WD40 repeat, subgroup.
 
     0.572
Rvan_1483
KEGG: sfu:Sfum_3853 hypothetical protein.
   
 0.558
Rvan_3466
TIGRFAM: small GTP-binding protein; PFAM: Ras family protein; KEGG: chl:Chy400_1355 small GTP-binding protein; SMART: Ras small GTPase, Rab type.
 
 
 0.556
Rvan_2826
KEGG: paa:Paes_2388 hypothetical protein.
 
     0.555
Rvan_2822
PFAM: protein of unknown function DUF323; KEGG: ter:Tery_1731 hypothetical protein.
 
     0.545
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
    
 0.535
Rvan_2828
KEGG: rru:Rru_A3261 hypothetical protein.
       0.516
Rvan_1163
Putative adenylate/guanylate cyclase; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: rhi:NGR_b01410 probable adenylate class-3/4/guanylyl cyclase; SMART: Tetratricopeptide repeat.
   
 
 0.513
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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