Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2830SMART: AAA ATPase; KEGG: rru:Rru_A3262 hypothetical protein. (1169 aa)    
Predicted Functional Partners:
Rvan_3333
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.799
Rvan_2829
KEGG: app:CAP2UW1_2906 hypothetical protein.
 
    
0.778
Rvan_0241
PFAM: protein of unknown function DUF1045; KEGG: rsq:Rsph17025_0908 hypothetical protein.
   
   0.726
Rvan_1629
Ham1 family protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
   
   0.726
Rvan_2826
KEGG: paa:Paes_2388 hypothetical protein.
 
     0.584
Rvan_2828
KEGG: rru:Rru_A3261 hypothetical protein.
       0.516
Rvan_2827
PFAM: protein of unknown function DUF323; KEGG: WD40 repeat, subgroup.
 
     0.500
Rvan_1823
PFAM: pentapeptide repeat protein; KEGG: azo:azo2973 pentapeptide repeat-containing protein.
  
     0.461
Rvan_2822
PFAM: protein of unknown function DUF323; KEGG: ter:Tery_1731 hypothetical protein.
 
     0.454
Rvan_0726
KEGG: oca:OCAR_7084 hypothetical protein.
 
     0.447
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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