STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2843PFAM: integrase family protein; KEGG: rpt:Rpal_3817 integrase family protein. (217 aa)    
Predicted Functional Partners:
Rvan_2841
KEGG: net:Neut_2577 transfer origin protein, TraL.
       0.636
Rvan_2842
KEGG: net:Neut_2576 hypothetical protein.
       0.634
Rvan_2840
KEGG: nhl:Nhal_0249 hypothetical protein.
       0.609
Rvan_2740
PFAM: phosphoribosyltransferase; KEGG: azc:AZC_4295 competence protein F.
   
    0.470
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.467
Rvan_3049
KEGG: pla:Plav_1584 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase.
  
    0.447
Rvan_3220
PFAM: protein of unknown function DUF159; KEGG: ana:all3194 hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.432
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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