Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2855Hypothetical protein; KEGG: ana:all0192 serine/threonine kinase. (277 aa)    
Predicted Functional Partners:
Rvan_3466
TIGRFAM: small GTP-binding protein; PFAM: Ras family protein; KEGG: chl:Chy400_1355 small GTP-binding protein; SMART: Ras small GTPase, Rab type.
    
 0.905
Rvan_1483
KEGG: sfu:Sfum_3853 hypothetical protein.
    
 0.887
Rvan_0447
KEGG: rpe:RPE_1474 hypothetical protein.
   
 0.861
Rvan_0008
TIGRFAM: CbbX protein; PFAM: AAA ATPase central domain protein; KEGG: rsp:RSP_1280 CbbX protein; SMART: AAA ATPase.
   
 0.810
Rvan_0635
AAA ATPase central domain protein; KEGG: scl:sce5713 cell division cycle protein 48-related protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; Belongs to the AAA ATPase family.
   
 0.810
Rvan_1975
PFAM: histone deacetylase superfamily; KEGG: histone deacetylase.
    
 
 0.806
Rvan_3344
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.803
Rvan_3345
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.803
Rvan_2455
PFAM: glycosyl transferase group 1; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: zmn:Za10_0102 glycosyl transferase group 1.
  
 0.794
Rvan_2274
PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: bja:bll3047 pyrrolidone-carboxylate peptidase; Belongs to the peptidase C15 family.
   
   0.770
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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