STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2872KEGG: bid:Bind_0096 hypothetical protein. (230 aa)    
Predicted Functional Partners:
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.574
Rvan_0986
PFAM: protein of unknown function DUF1013; KEGG: met:M446_6075 hypothetical protein.
  
     0.556
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.531
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
     0.526
Rvan_0524
PFAM: Glutathione S-transferase domain; KEGG: mno:Mnod_5423 glutathione S-transferase domain protein.
  
     0.506
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
    0.483
Rvan_3012
KEGG: rpt:Rpal_4013 protein of unknown function DUF1321.
  
     0.479
Rvan_2627
PFAM: import inner membrane translocase subunit Tim44; KEGG: azc:AZC_4600 mitochondrial import inner membrane translocase.
  
     0.477
Rvan_2875
KEGG: xau:Xaut_0084 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
     
 0.472
Rvan_1699
KEGG: mfa:Mfla_1738 hypothetical protein; Belongs to the UPF0225 family.
  
    0.457
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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