STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2873Transcriptional regulator, BadM/Rrf2 family; KEGG: pzu:PHZ_c1722 predicted transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074. (158 aa)    
Predicted Functional Partners:
Rvan_2874
Cysteine desulfurase; KEGG: smd:Smed_1469 aminotransferase class V; PFAM: aminotransferase class V.
 
  
 0.990
Rvan_1993
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
  
 0.935
Rvan_1039
PFAM: nitrogen-fixing NifU domain protein; KEGG: azc:AZC_0943 NifU-like protein.
  
  
 0.746
Rvan_2875
KEGG: xau:Xaut_0084 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
     
 0.685
Rvan_2882
KEGG: iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
  
 0.659
Rvan_2879
KEGG: nwi:Nwi_1662 FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein.
     
 0.577
Rvan_2878
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: xau:Xaut_4468 FeS assembly ATPase SufC; SMART: AAA ATPase.
     
 0.574
Rvan_2876
Hypothetical protein; Manually curated; KEGG: cpi:Cpin_5650 hypothetical protein.
       0.527
Rvan_2877
Hypothetical protein; KEGG: aga:AgaP_AGAP000724 AGAP000724-PA.
       0.527
Rvan_3442
KEGG: bbt:BBta_5902 putative iron-sulfur cluster assembly protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
  
 0.524
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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