Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2877Hypothetical protein; KEGG: aga:AgaP_AGAP000724 AGAP000724-PA. (75 aa)    
Predicted Functional Partners:
Rvan_2876
Hypothetical protein; Manually curated; KEGG: cpi:Cpin_5650 hypothetical protein.
       0.773
Rvan_2878
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: xau:Xaut_4468 FeS assembly ATPase SufC; SMART: AAA ATPase.
       0.762
Rvan_2879
KEGG: nwi:Nwi_1662 FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein.
       0.751
Rvan_2880
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.681
Rvan_2881
KEGG: hne:HNE_2613 hypothetical protein; TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59.
       0.681
Rvan_2875
KEGG: xau:Xaut_0084 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
       0.642
Rvan_2873
Transcriptional regulator, BadM/Rrf2 family; KEGG: pzu:PHZ_c1722 predicted transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074.
       0.527
Rvan_2874
Cysteine desulfurase; KEGG: smd:Smed_1469 aminotransferase class V; PFAM: aminotransferase class V.
       0.527
Rvan_2882
KEGG: iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
       0.405
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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