STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2883PFAM: protein of unknown function DUF583; KEGG: lch:Lcho_3739 outer membrane adhesin like proteiin. (213 aa)    
Predicted Functional Partners:
Rvan_1555
KEGG: mno:Mnod_3763 peptidase M10A and M12B matrixin and adamalysin; PFAM: peptidase M10A and M12B matrixin and adamalysin; SMART: peptidase metallopeptidase.
  
     0.732
Rvan_2717
KEGG: protein of unknown function DUF88.
  
 
   0.690
Rvan_2224
PFAM: Hep_Hag repeat-containing protein; KEGG: hmg:100209204 similar to predicted protein.
  
 
   0.683
Rvan_1306
KEGG: pla:Plav_3330 hypothetical protein.
  
     0.665
Rvan_1713
KEGG: rru:Rru_A0644 hypothetical protein.
  
     0.652
Rvan_3517
KEGG: oca:OCAR_4436 hypothetical protein.
  
     0.631
Rvan_2185
KEGG: psl:Psta_4598 hypothetical protein.
  
     0.549
Rvan_0872
PFAM: phosphopantetheine-binding; KEGG: rru:Rru_A0044 acyl carrier protein.
  
     0.545
Rvan_0075
KEGG: pla:Plav_3269 hypothetical protein.
 
     0.528
Rvan_0151
KEGG: gau:GAU_0057 hypothetical protein.
  
     0.468
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.