Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2884Hypothetical protein; KEGG: pag:PLES_40461 putative oxidoreductase. (100 aa)    
Predicted Functional Partners:
Rvan_2885
PFAM: protein of unknown function DUF214; KEGG: hna:Hneap_0780 protein of unknown function DUF214.
       0.554
Rvan_2886
KEGG: ret:RHE_CH02075 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.554
Rvan_2883
PFAM: protein of unknown function DUF583; KEGG: lch:Lcho_3739 outer membrane adhesin like proteiin.
       0.439
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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