STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2889KEGG: bja:bll4354 hypothetical protein. (249 aa)    
Predicted Functional Partners:
Rvan_1206
KEGG: bra:BRADO6669 putative outer-membrane immunogenic protein precursor; putative secreted protein.
  
     0.704
Rvan_2348
KEGG: nwi:Nwi_1148 hypothetical protein.
  
     0.677
Rvan_3523
PFAM: Conserved hypothetical protein CHP02301; KEGG: rpt:Rpal_1260 hypothetical protein.
  
     0.669
Rvan_0917
PFAM: protein of unknown function DUF1150; KEGG: oca:OCAR_4463 hypothetical protein.
  
     0.655
Rvan_0922
KEGG: rpc:RPC_4252 hypothetical protein.
  
     0.655
Rvan_2892
PFAM: protein of unknown function DUF477; KEGG: abo:ABO_1880 hypothetical protein.
 
     0.618
Rvan_1613
KEGG: nha:Nham_0755 hypothetical protein.
  
     0.602
Rvan_1938
Hypothetical protein; Manually curated; KEGG: oca:OCAR_4675 hypothetical protein.
  
     0.584
Rvan_0909
KEGG: met:M446_2502 hypothetical protein.
  
     0.582
Rvan_3095
PFAM: Uncharacterised protein family UPF0079, ATPase; aminoglycoside phosphotransferase; KEGG: msl:Msil_0666 protein of unknown function UPF0079.
  
     0.575
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.