STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2891PFAM: protein of unknown function DUF477; KEGG: sjp:SJA_C1-10380 hypothetical protein. (288 aa)    
Predicted Functional Partners:
Rvan_2892
PFAM: protein of unknown function DUF477; KEGG: abo:ABO_1880 hypothetical protein.
     0.977
Rvan_2890
PFAM: LemA family protein; KEGG: mes:Meso_3226 hypothetical protein.
 
    0.960
Rvan_1294
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.953
Rvan_0756
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
   0.802
Rvan_1295
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
   0.802
Rvan_1290
Gluconate 2-dehydrogenase (acceptor); KEGG: mea:Mex_1p5282 putative cytochrome c, putative exported protein; PFAM: cytochrome c class I.
    
   0.682
Rvan_1824
Hypothetical protein; KEGG: azo:azo2974 putative cytochrome c550.
    
   0.682
Rvan_1825
PFAM: cytochrome c class I; KEGG: azl:AZL_a09940 cytochrome c550.
    
   0.682
Rvan_2235
KEGG: sus:Acid_5771 hypothetical protein.
    
   0.682
Rvan_2924
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
    
   0.682
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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