Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Rvan_2892PFAM: protein of unknown function DUF477; KEGG: abo:ABO_1880 hypothetical protein. (205 aa)    
Predicted Functional Partners:
Rvan_2891
PFAM: protein of unknown function DUF477; KEGG: sjp:SJA_C1-10380 hypothetical protein.
     0.981
Rvan_2890
PFAM: LemA family protein; KEGG: mes:Meso_3226 hypothetical protein.
 
     0.952
Rvan_2889
KEGG: bja:bll4354 hypothetical protein.
 
     0.617
Rvan_2888
KEGG: bja:bll4354 hypothetical protein.
 
     0.497
Rvan_2893
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: mch:Mchl_4204 oxidoreductase FAD/NAD(P)-binding domain protein.
       0.485
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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