STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rvan_2897PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pla:Plav_0246 binding-protein-dependent transport systems inner membrane component. (380 aa)    
Predicted Functional Partners:
Rvan_2898
KEGG: mes:Meso_4080 ABC transporter related; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.996
Rvan_2896
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_0133 peptide ABC transporter permease protein.
  
 0.990
Rvan_1520
TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: azc:AZC_3397 phosphonate C-P lyase system protein PhnK; SMART: AAA ATPase.
 
     0.918
Rvan_2319
KEGG: pla:Plav_2513 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
      0.888
Rvan_2608
ABC transporter related protein; KEGG: vvu:VV1_2101 ABC-type histidine transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
 
      0.843
Rvan_2894
PFAM: extracellular solute-binding protein family 5; KEGG: bbt:BBta_7055 oligopeptide ABC transporter periplasmic substrate-binding protein.
  
 0.837
Rvan_2895
PFAM: extracellular solute-binding protein family 5; KEGG: pla:Plav_0248 extracellular solute-binding protein.
 
  
 0.837
Rvan_3306
PFAM: extracellular solute-binding protein family 5; KEGG: pla:Plav_3093 extracellular solute-binding protein.
 
  
 0.817
Rvan_2310
KEGG: xau:Xaut_1758 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
      0.674
Rvan_2712
KEGG: bra:BRADO6145 glutamate/aspartate ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
      0.603
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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