Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rvan_2945KEGG: msl:Msil_1227 hypothetical protein. (215 aa)    
Predicted Functional Partners:
Rvan_2210
PFAM: HemY domain protein; KEGG: HemY domain protein.
  
     0.759
Rvan_0075
KEGG: pla:Plav_3269 hypothetical protein.
  
    0.691
Rvan_0220
KEGG: azl:AZL_027200 double-strand break repair protein.
  
     0.627
Rvan_1631
PFAM: Extracellular ligand-binding receptor; KEGG: pla:Plav_3584 extracellular ligand-binding receptor.
  
     0.606
Rvan_2627
PFAM: import inner membrane translocase subunit Tim44; KEGG: azc:AZC_4600 mitochondrial import inner membrane translocase.
  
     0.562
Rvan_3418
PFAM: Protein of unknown function DUF2155; KEGG: mch:Mchl_1229 hypothetical protein.
  
     0.559
Rvan_1212
Regulatory protein MarR; KEGG: mno:Mnod_7567 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
  
     0.557
Rvan_1305
KEGG: msl:Msil_0656 SmpA/OmlA domain protein; manually curated; PFAM: SmpA/OmlA domain-containing protein.
  
     0.551
Rvan_0627
KEGG: oca:OCAR_4056 nuclease; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein).
  
     0.548
Rvan_0184
PFAM: ETC complex I subunit conserved region; KEGG: pla:Plav_2976 ETC complex I subunit region.
  
     0.531
Your Current Organism:
Rhodomicrobium vannielii
NCBI taxonomy Id: 648757
Other names: R. vannielii ATCC 17100, Rhodomicrobium vannielii ATCC 17100, Rhodomicrobium vannielii NCIMB 10020, Rhodomicrobium vannielii str. ATCC 17100, Rhodomicrobium vannielii strain ATCC 17100
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